Oral Microbiome Resilience: From Ecological Stability to Precision Oral Healthcare

Author's Information:

Felisha Febriane Balafif

Microbiology, Department of Oral Biology, Faculty of Dentistry Universitas Padjadjaram, Indonesia

Anggun Rafisa

Physiology, Department of Oral Biology, Faculty of Dentistry Universitas Padjadjaram, Indonesia

Faisal Kuswandani

Pharmacy, Department of Oral Biology, Faculty of Dentistry Universitas Padjadjaram, Indonesia

Nuroh Najmi

Anatomy Pathology, Department of Oral Biology, Faculty of Dentistry Universitas Padjadjaram, Indonesia

Vol 03 No 08 (2026):Volume 03 Issue 08 August 2026

Page No.: 393-399

Abstract:

Introduction: The concept of oral microbiome resilience has emerged as a new paradigm that emphasizes the ability of the oral microbial ecosystem to maintain ecological stability and recover from environmental disturbances. This concept provides a broader perspective than dysbiosis alone and supports the development of precision oral healthcare. This narrative review aimed to summarize current evidence on oral microbiome resilience, its underlying biological mechanisms, and its potential applications in precision oral healthcare.

Methods: A narrative review was conducted following the SANRA guidelines. Literature published in English between January 2016 and June 2026 was identified through PubMed and Google Scholar. Eligible studies included original research, randomized controlled trials, observational studies, systematic reviews, meta-analyses, and narrative reviews investigating oral microbiome ecology, resilience, dysbiosis, and microbiome-based interventions.

Results: Current evidence indicates that oral microbiome resilience is influenced by microbial diversity, host immunity, salivary function, and microbial interactions. Probiotics, xylitol, and mechanical biofilm disruption were shown to promote ecological recovery and improve oral health, whereas dietary interventions demonstrated limited short-term effects. Emerging microbiome-based strategies support restoration of ecological balance rather than indiscriminate microbial elimination.

Conclusion: Oral microbiome resilience provides a promising framework for precision oral healthcare by promoting personalized prevention and ecological modulation of the oral microbiome. Future longitudinal multi-omics studies are needed to validate resilience biomarkers and facilitate clinical translation.

KeyWords:

oral microbiome, microbiome resilience, ecological stability, precision dentistry, oral healthcare

References:

  1. Abdul Manan, M. (2025). The role of probiotics in personalized therapeutics: Advances in gut microbe-driven interventions. The Microbe, 8, 100497. https://doi.org/10.1016/j.microb.2025.100497
  2. Ayala-Ortiz, C., Freire-Zapata, V., & Tfaily, M. M. (2025). Stochastic assembly and metabolic network reorganization drive microbial resilience in arid soils. Communications Earth & Environment, 6(1), 647. https://doi.org/10.1038/s43247-025-02637-y
  3. Badia, P., Andersen, H., Haslam, D., Nelson, A. S., Pate, A. R., Golkari, S., Teusink-Cross, A., Flesch, L., Bedel, A., Hickey, V., Kramer, K., Lane, A., Davies, S. M., Thikkurissy, S., & Dandoy, C. E. (2020). Improving Oral Health and Modulating the Oral Microbiome to Reduce Bloodstream Infections from Oral Organisms in Pediatric and Young Adult Hematopoietic Stem Cell Transplantation Recipients: A Randomized Controlled Trial. Biology of Blood and Marrow Transplantation, 26(9), 1704–1710. https://doi.org/10.1016/j.bbmt.2020.05.019
  4. Baker, J. L., Mark Welch, J. L., Kauffman, K. M., McLean, J. S., & He, X. (2024). The oral microbiome: diversity, biogeography and human health. Nature Reviews Microbiology, 22(2), 89–104. https://doi.org/10.1038/s41579-023-00963-6
  5. Balafif, F. F., Rafisa, A., Kuswandani, F., & Najmi, N. (2023). The Role of Probiotic in Oral Biofilm. European Journal of Theoretical and Applied Sciences, 1(6), 1122–1126. https://doi.org/10.59324/ejtas.2023.1(6).108
  6. Balafif, F. F., Rafisa, A., Kuswandani, F., & Najmi, N. (2025). Quorum Sensing and the Transition from Symbiosis to Dysbiosis in Periodontal Biofilms: A Scoping Review. Jurnal EduHealth, 16(04), 1974–1979. https://doi.org/10.54209/eduhealth.v16i04
  7. Bhandary, R., Venugopalan, G., Ramesh, A., Tartaglia, G., Singhal, I., & Khijmatgar, S. (2024). Microbial Symphony: Navigating the Intricacies of the Human Oral Microbiome and Its Impact on Health. Microorganisms, 12(3), 571. https://doi.org/10.3390/microorganisms12030571
  8. Burten, R. B., Lawler, R. R., Ratsirarson, J., Ranaivonasy, J., Leduc, R., Bhagat, A., Lopez, A., & Kamilar, J. M. (2024). The resilience of the oral microbiome and lability of the hair microbiome across host environments in wild and captive lemurs. https://doi.org/10.1101/2024.09.09.612164
  9. Carbone, E., Fabrizi, E., Rivabene, R., Cappella, M., Fortini, P., Conti, L., Locuratolo, N., Lorenzini, P., Lacorte, E., & Piscopo, P. (2025). Human oral microbiome in aging: A systematic review. Mechanisms of Ageing and Development, 226, 112080. https://doi.org/10.1016/j.mad.2025.112080
  10. Grady, N. G., Petrof, E. O., & Claud, E. C. (2016). Microbial therapeutic interventions. Seminars in Fetal and Neonatal Medicine, 21(6), 418–423. https://doi.org/10.1016/j.siny.2016.04.005
  11. Johnston, W., Rosier, B. T., Artacho, A., Paterson, M., Piela, K., Delaney, C., Brown, J. L., Ramage, G., Mira, A., & Culshaw, S. (2021). Mechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients. Scientific Reports, 11(1), 9796. https://doi.org/10.1038/s41598-021-89002-z
  12. Kilian, M., Chapple, I. L. C., Hannig, M., Marsh, P. D., Meuric, V., Pedersen, A. M. L., Tonetti, M. S., Wade, W. G., & Zaura, E. (2016). The oral microbiome – an update for oral healthcare professionals. British Dental Journal, 221(10), 657–666. https://doi.org/10.1038/sj.bdj.2016.865
  13. Kreth, J., & Merritt, J. (2023). Illuminating the oral microbiome and its host interactions: tools and approaches for molecular ecological studies. FEMS Microbiology Reviews, 47(1). https://doi.org/10.1093/femsre/fuac052
  14. Lamont, R. J., Koo, H., & Hajishengallis, G. (2018). The oral microbiota: dynamic communities and host interactions. Nature Reviews Microbiology, 16(12), 745–759. https://doi.org/10.1038/s41579-018-0089-x
  15. Latif, A., Shehzad, A., Niazi, S., Zahid, A., Ashraf, W., Iqbal, M. W., Rehman, A., Riaz, T., Aadil, R. M., Khan, I. M., Özogul, F., Rocha, J. M., Esatbeyoglu, T., & Korma, S. A. (2023). Probiotics: mechanism of action, health benefits and their application in food industries. Frontiers in Microbiology, 14. https://doi.org/10.3389/fmicb.2023.1216674
  16. Lundtorp Olsen, C., Massarenti, L., Vendius, V. F. D., Gürsoy, U. K., Van Splunter, A., Bikker, F. J., Gürsoy, M., Damgaard, C., Markvart, M., & Belstrøm, D. (2023). Probiotics Support Resilience of the Oral Microbiota during Resolution after Experimental Gingivitis—A Randomized, Double-Blinded, Placebo-Controlled Trial. Nutrients, 15(22), 4805. https://doi.org/10.3390/nu15224805
  17. Mazziotta, C., Tognon, M., Martini, F., Torreggiani, E., & Rotondo, J. C. (2023). Probiotics Mechanism of Action on Immune Cells and Beneficial Effects on Human Health. Cells, 12(1), 184. https://doi.org/10.3390/cells12010184
  18. Rosier, B. T., Marsh, P. D., & Mira, A. (2018). Resilience of the Oral Microbiota in Health: Mechanisms That Prevent Dysbiosis. Journal of Dental Research, 97(4), 371–380. https://doi.org/10.1177/0022034517742139
  19. Sakhare, S., Shantanu, C., Mopagar, V., Hadpe, H. S., Choughule, K., Dahapute, S., Shetty, S., & Joshi, S. (2021). A comparative evaluation of probiotic formulations in prevention of dental caries. Journal of Indian Society of Pedodontics and Preventive Dentistry, 39(4), 416–422. https://doi.org/10.4103/jisppd.jisppd_236_21
  20. Salah, A. N., Doghish, Y. A., Abbass, S. O., Mansour, R. M., Sayed, G. A., Elshami, N. H., Mageed, S. S. A., Mohammed, O. A., Abulsoud, A. I., Zaki, M. B., Mosalam, E. M., Elrebehy, M. A., Alfarsi, K., & Doghish, A. S. (2025a). Microbiota-based therapies in oral health and disorders. Folia Microbiologica, 70(6), 1217–1240. https://doi.org/10.1007/s12223-025-01324-x
  21. Salah, A. N., Doghish, Y. A., Abbass, S. O., Mansour, R. M., Sayed, G. A., Elshami, N. H., Mageed, S. S. A., Mohammed, O. A., Abulsoud, A. I., Zaki, M. B., Mosalam, E. M., Elrebehy, M. A., Alfarsi, K., & Doghish, A. S. (2025b). Microbiota-based therapies in oral health and disorders. Folia Microbiologica, 70(6), 1217–1240. https://doi.org/10.1007/s12223-025-01324-x
  22. Scannapieco, F. A., & Dongari‐Bagtzoglou, A. (2021). Dysbiosis revisited: Understanding the role of the oral microbiome in the pathogenesis of gingivitis and periodontitis: A critical assessment. Journal of Periodontology, 92(8), 1071–1078. https://doi.org/10.1002/JPER.21-0120
  23. Shade, A. (2023). Microbiome rescue: directing resilience of environmental microbial communities. Current Opinion in Microbiology, 72, 102263. https://doi.org/10.1016/j.mib.2022.102263
  24. Shibl, A. A., Denekew, T. W., Ahmad, A. R., Abdelrazig, S., Leonor, C. E., Utenova, L., Zhang, G., AbdelBaqi, M., Malla, Y., Arshad, M., Arnoux, M., Drou, N., Abdulle, A., Ali, R., Amin, S. A., Idaghdour, Y., & Jha, A. R. (2026). Integrative multi-omics analysis reveals oral microbiome-metabolome signatures of obesity. Cell Reports, 45(2), 116819. https://doi.org/10.1016/j.celrep.2025.116819
  25. Tegegne, H. A., & Savidge, T. C. (2025). Leveraging human microbiomes for disease prediction and treatment. Trends in Pharmacological Sciences, 46(1), 32–44. https://doi.org/10.1016/j.tips.2024.11.007
  26. Wade, W. G. (2021). Resilience of the oral microbiome. Periodontology 2000, 86(1), 113–122. https://doi.org/10.1111/prd.12365